Lots of discussion about this over on BoaterEd.com and TheHullTruth.com down through the years.
Switch should be in the OFF position when you are not using the boat (obvious)
Switch should be in the BOTH position ONLY when the primary starting battery is having trouble starting the motor. When you tie both batteries together a bad cell in one could pull the other down, stranding you. If you have a particular battery that continues to have trouble staying charged, replace it, don't use the BOTH position as a crutch.
Some guys alternate the 1 and 2 positions: To the fishing grounds on 1, back home on 2; or, 1 on odd days, 2 on even days.
Since I have twin motors, two batteries, and each motor-battery combination has its own off-1-both-2 switch, I run the starboard motor switch in the 1 position and the port motor switch in the 2 position. I only strap them together in the BOTH position when I've run the electronics too long on the hook and the starboard (house) battery won't crank the starboard engine.
BTW, the most common cause of a battery not cranking a motor is corrosion on the battery terminals and wire lugs.
Dave
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